Element · Z 1 · 1.008
Hydrogen
One proton. It is the most abundant atom in your body, the definition of pH, the currency your mitochondria actually run on — and the excuse for more bottled water than any other element.
Electron configuration choose a subshell to draw it
Positive phase Negative phase same sign bonds · opposite cancels
What it is
A single proton with a single electron, and about 62% of all the atoms in a human being, though only around 10% of the mass. Almost none of it is loose. It is bonded into water, into every organic molecule you contain, and — most consequentially — into the weak, constantly breaking hydrogen bonds that hold the two strands of DNA together, fold proteins, and give water the anomalous properties life depends on. The free version, the bare proton, exists at a concentration of about forty nanomoles per litre in blood, and defending that number is one of the body's least negotiable jobs.
Why it matters
Hydrogen is where the wellness industry's favourite word lives. Alkaline water, alkaline diets, acid–base balance, ionisers, drops — all of them are claims about the concentration of one ion, and almost all of them are claims the body has already settled. But the element is not a dead end for the show, because two genuinely live research questions also sit here: molecular hydrogen as a selective antioxidant, which has small human trials and no large ones, and hydrogen breath testing, which is the commonest gut test in the world and is much weaker than it is presented as being.
Too little
Acidaemia below pH 7.35, and the causes are the whole of acute medicine: lactate from hypoperfusion, ketones from insulin deficiency, retained CO₂ from a failing respiratory pump, lost bicarbonate from the gut, retained acid from a failing kidney. Around pH 7.0 cardiac contractility falls and catecholamines stop working properly; survival below about 6.8 is rare.
Too much
Alkalaemia above 7.45, most often from vomiting, diuretics or hyperventilation. It shifts the dissociation curve so haemoglobin holds oxygen more tightly and delivers less, drops ionised calcium and causes the tetany and perioral tingling of a panic attack.
The window is 0.1 of a pH unit wide and it is defended by three systems on three timescales — the bicarbonate buffer in seconds, the lungs in minutes, the kidneys over days. No food moves it. This is the specific, checkable fact that the entire alkaline-diet category depends on people not knowing.
Dose · response arterial pH
Reference intakes and observed thresholds, not trial endpoints. An RDA is a population construct — the amount that covers most people — and no individual is a population.
Mechanism
Why an alkaline diet cannot alkalise you
Blood pH is held between 7.35 and 7.45 by buffering, respiration and renal handling, and a person whose diet had moved it would be in hospital, not at a health food shop. What diet genuinely changes is urine pH, because the kidney is the organ doing the excreting — so an alkaline-diet test strip turning blue is evidence the system worked, not evidence the blood changed. There is one real clinical use of the same chemistry, which is why this is not simply a debunk: deliberately alkalinising urine dissolves uric acid stones and speeds the clearance of certain overdoses. The mechanism is sound. The claim attached to it is not.
The proton is the battery
Mitchell's chemiosmotic hypothesis was rejected for years because it proposed something nobody expected: the electron transport chain does not hand energy to a chemical intermediate, it pumps protons across the inner mitochondrial membrane and stores the energy as a gradient. ATP synthase is then a literal rotary motor, turned by protons falling back through it, about 100 to 150 times a second. It won the 1978 Nobel Prize. Every uncoupling agent — including the diet drug 2,4-dinitrophenol, which killed people in the 1930s and still kills people who buy it online — works by punching a hole in that gradient so the protons leak back and the energy leaves as heat.
Molecular hydrogen, and why it is not obviously nonsense
H₂ gas is small enough to diffuse anywhere, including into mitochondria, and it is chemically almost inert — which is the argument for it. Ohsawa's 2007 paper in Nature Medicine reported that it selectively reduced the hydroxyl radical, the most destructive reactive oxygen species, while NOT reacting with the ones that carry physiological signals. If that holds, it dodges the antioxidant paradox entirely. Two cautions travel with it. The animal arm of that paper used inhaled gas in a rat stroke model, which is not what is sold in a pouch. And the human literature since is a large number of small, short trials with heterogeneous outcomes and no large confirmatory trial. The sourcing question is unusually concrete here too: dissolved hydrogen escapes an open container within minutes, so what is drunk is often not what was dissolved.
Deuterium, and a much weaker claim
About one hydrogen atom in 6,400 in ordinary water is deuterium, a hydrogen with a neutron. Deuterium-depleted water is sold, chiefly for cancer, on the argument that the heavier isotope slows enzymes through a kinetic isotope effect. The isotope effect is real chemistry and it is measurable in vitro. The clinical evidence is a handful of small studies from a narrow set of investigators, and the production process — fractional distillation or electrolysis to strip an isotope from water — is expensive enough that the price is the product's most reliable feature.
Where the breath test actually comes from
Human cells do not make hydrogen. Every molecule of it in your breath was made by bacteria fermenting carbohydrate, absorbed across the gut wall, carried in the blood and exhaled — which is why a breath sample can report on an intestine. That is an elegant piece of physiology and it is the entire basis of lactose, fructose and small intestinal bacterial overgrowth testing. It is also why roughly 15–25% of people are non-producers whose gut flora make methane instead, and who therefore cannot produce a positive hydrogen test no matter what is wrong with them.
What to measure
- Arterial pH and blood gasThe actual measurement of hydrogen ion concentration, reported on a logarithmic scale.Near-definitive, and the derived anion gap and base excess are what separate the causes.A normal pH does not mean normal acid–base status — a mixed metabolic acidosis and respiratory alkalosis can cancel out. The pH is the answer; the gap is the diagnosis.The first test in any acutely unwell patient
- Urine pHA dipstick, and the number the alkaline-diet industry points at.It measures what it says it measures, and it genuinely moves with diet.It reports renal excretion, not systemic pH, and treating it as a proxy for blood is the category error the whole category rests on. It has real uses — stone typing, renal tubular acidosis, deliberate urinary alkalinisation — and none of them is wellness.Clinically useful for stones and tubular disorders; useless as a diet readout
- Lactulose hydrogen breath test for SIBOLactulose is swallowed and breath hydrogen measured every 15–20 minutes for two to three hours.Widely available, cheap and non-invasive, and the North American Consensus set a threshold of a rise of ≥20 ppm over baseline within 90 minutes.A great deal. Lactulose accelerates transit, so an early rise may be the substrate reaching the colon on time rather than bacteria in the small bowel; against jejunal aspirate culture, sensitivity and specificity are both poor and estimates range widely. Non-producers make methane and cannot test positive. This is the commonest gut test in the world and the weakest one in this atlas.Ordered constantly, and interpreted far more confidently than it deserves
- Glucose hydrogen breath testGlucose instead of lactulose, absorbed proximally.More specific than lactulose, because glucose is normally absorbed before it reaches the colon, so a rise is likelier to be small-bowel.Less sensitive for distal small-bowel overgrowth for exactly the same reason. The trade between the two substrates is a genuine one, and neither wins.
- Methane and hydrogen sulfideAdded channels on newer analysers, because hydrogen alone misses whole populations.Methane ≥10 ppm at any point defines intestinal methanogen overgrowth, which tracks with constipation rather than diarrhoea and is a different entity.Hydrogen sulfide testing is newer, less standardised, and not widely available; a two-gas analyser still misses the third.
Sources
- Ohsawa I, Ishikawa M, Takahashi K, et al. Hydrogen acts as a therapeutic antioxidant by selectively reducing cytotoxic oxygen radicals.Nat Med · 2007 · 13(6):688–9410.1038/nm1577
- Rezaie A, Buresi M, Lembo A, et al. Hydrogen and methane-based breath testing in gastrointestinal disorders: the North American Consensus.Am J Gastroenterol · 2017 · 112(5):775–8410.1038/ajg.2017.46